Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system atpase sctn | YDC107_RS07370 | Not Available | Negative | 1495767 - 1497059 | 47573.4 |
| escv/yscv/hrcv family type iii secretion system export apparatus protein | YDC107_RS07375 | Not Available | Negative | 1497091 - 1499151 | 76435.6 |
| yopn/lcre/inve/mxic type iii secretion system gatekeeper | YDC107_RS07380 | Not Available | Negative | 1499144 - 1500289 | 43573.7 |
| type iii secretion system outer membrane ring subunit sctc | YDC107_RS07385 | Not Available | Negative | 1500294 - 1501997 | 62757.4 |
| helix-turn-helix domain-containing protein | YDC107_RS07390 | Not Available | Negative | 1501994 - 1502743 | 28286.4 |
| ghot/ortt family toxin | YDC107_RS07395 | Not Available | Negative | 1503089 - 1503268 | 6628.51 |
| glycoside hydrolase family 15 protein | YDC107_RS07400 | Not Available | Negative | 1503334 - 1504944 | 60395.6 |
| Trna-gly | Not Available | Not Available | Positive | 1505177 - 1505250 | Not Available |
| amidase activator acts | YDC107_RS07410 | Not Available | Negative | 1505329 - 1506081 | 26452.9 |
| xanthine dehydrogenase molybdenum-binding subunit xdha | YDC107_RS07415 | Not Available | Positive | 1506497 - 1508794 | 82734.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





