Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix transcriptional regulator | YDC107_RS07325 | Not Available | Positive | 1489840 - 1490340 | 19131.0 |
| invasion protein | YDC107_RS07330 | Not Available | Positive | 1490370 - 1490636 | 10057.0 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | YDC107_RS07335 | Not Available | Negative | 1490706 - 1491830 | 43471.5 |
| type iii secretion system export apparatus subunit sctt | YDC107_RS07340 | Not Available | Negative | 1491827 - 1492594 | 28155.7 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | YDC107_RS07345 | Not Available | Negative | 1492596 - 1492856 | 9430.85 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | YDC107_RS07350 | Not Available | Negative | 1492866 - 1493531 | 24526.4 |
| s49 family peptidase | YDC107_RS07355 | Not Available | Negative | 1493521 - 1494508 | 34545.0 |
| type iii secretion system needle length determinant, span/eivj family | YDC107_RS28730 | Not Available | Negative | 1494468 - 1495037 | 22311.2 |
| s49 family peptidase | YDC107_RS28350 | Not Available | Negative | 1495113 - 1495341 | 8424.94 |
| hypothetical protein | YDC107_RS07365 | Not Available | Negative | 1495319 - 1495777 | 18302.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





