Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | YDC107_RS07220 | Not Available | Negative | 1473550 - 1474386 | 31092.2 |
| acetyl-coa c-acetyltransferase | YDC107_RS07225 | Not Available | Negative | 1474673 - 1475854 | 40997.1 |
| amino acid permease | YDC107_RS07230 | Not Available | Positive | 1476109 - 1477338 | 45087.9 |
| helix-turn-helix transcriptional regulator | YDC107_RS07235 | Not Available | Positive | 1477798 - 1478430 | 24387.3 |
| s49 family peptidase | YDC107_RS07240 | Not Available | Positive | 1478764 - 1479573 | 30707.7 |
| protein yqej | YDC107_RS07245 | Not Available | Positive | 1479566 - 1480048 | 18733.6 |
| hypothetical protein | YDC107_RS07250 | Not Available | Negative | 1480081 - 1480161 | 3248.9 |
| protein yqek | YDC107_RS07255 | Not Available | Negative | 1480197 - 1480622 | 16257.5 |
| hypothetical protein | YDC107_RS07265 | Not Available | Positive | 1481052 - 1481543 | 18619.7 |
| tetratricopeptide repeat protein | YDC107_RS07270 | Not Available | Positive | 1481769 - 1482260 | 18925.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





