Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Transposase is1 | YDC107_RS08010 | Not Available | Negative | 1629278 - 1629975 | 26390.2 |
| p fimbria major subunit papa | YDC107_RS08015 | Not Available | Negative | 1630004 - 1630574 | 19651.4 |
| adhesin biosynthesis transcription regulatory family protein | YDC107_RS28740 | Not Available | Negative | 1630782 - 1631095 | 11510.3 |
| major pilus subunit operon transcriptional regulator papi | YDC107_RS08025 | Not Available | Positive | 1631500 - 1631733 | 8759.51 |
| Transposase is629 | YDC107_RS08040 | Not Available | Negative | 1632297 - 1633058 | 28725.2 |
| Is21 transposase | YDC107_RS08045 | Not Available | Positive | 1633161 - 1634333 | 45855.9 |
| Transposase/is protein | YDC107_RS08050 | Not Available | Positive | 1634333 - 1635130 | 30530.3 |
| Transposase orfa protein of insertion sequence is629 | YDC107_RS08055 | Not Available | Negative | 1635173 - 1635644 | 16390.8 |
| Cell lysis protein | YDC107_RS08060 | Not Available | Negative | 1635762 - 1635863 | 3976.96 |
| Transposase | YDC107_RS08065 | Not Available | Negative | 1636384 - 1637133 | 29044.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





