Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| maly/patb family protein | YDC107_RS07065 | Not Available | Negative | 1434138 - 1435322 | 45434.3 |
| pts transporter subunit eiic | YDC107_RS07070 | Not Available | Negative | 1435322 - 1436902 | 57642.1 |
| prd domain-containing protein | YDC107_RS07075 | Not Available | Negative | 1436934 - 1437758 | 32088.8 |
| n-acetylmuramoyl-l-alanine amidase amic | YDC107_RS07080 | Not Available | Negative | 1438016 - 1439269 | 45637.1 |
| amino-acid n-acetyltransferase | YDC107_RS07085 | Not Available | Positive | 1439501 - 1440832 | 49212.2 |
| exodeoxyribonuclease v subunit alpha | YDC107_RS07090 | Not Available | Negative | 1440894 - 1442720 | 66770.1 |
| exodeoxyribonuclease v subunit beta | YDC107_RS07095 | Not Available | Negative | 1442720 - 1446262 | 133996.0 |
| pitrilysin | YDC107_RS07100 | Not Available | Negative | 1446255 - 1449143 | 107746.0 |
| exodeoxyribonuclease v subunit gamma | YDC107_RS07105 | Not Available | Negative | 1449319 - 1452687 | 128816.0 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | YDC107_RS07110 | Not Available | Negative | 1452700 - 1453023 | 12004.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





