Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(13) synthase trud | YDC107_RS06660 | Not Available | Negative | 1348638 - 1349687 | 39078.7 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | YDC107_RS06665 | Not Available | Negative | 1349684 - 1350163 | 16898.6 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | YDC107_RS06670 | Not Available | Negative | 1350163 - 1350873 | 25724.7 |
| cell division protein ftsb | YDC107_RS06675 | Not Available | Negative | 1350892 - 1351203 | 11622.7 |
| duf3561 family protein | YDC107_RS06680 | Not Available | Negative | 1351397 - 1351720 | 12018.0 |
| adenylyl-sulfate kinase | YDC107_RS06685 | Not Available | Negative | 1351770 - 1352375 | 22322.7 |
| sulfate adenylyltransferase subunit cysn | YDC107_RS06690 | Not Available | Negative | 1352375 - 1353802 | 52561.5 |
| sulfate adenylyltransferase subunit cysd | YDC107_RS06695 | Not Available | Negative | 1353804 - 1354712 | 35205.3 |
| alkaline phosphatase isozyme conversion aminopeptidase | YDC107_RS06700 | Not Available | Positive | 1354964 - 1356001 | 37847.2 |
| type i-e crispr-associated endoribonuclease cas2e | YDC107_RS06705 | Not Available | Negative | 1356696 - 1356989 | 10976.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





