Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hpr family phosphocarrier protein | YDC107_RS06610 | Not Available | Positive | 1339732 - 1340508 | 29219.5 |
| gntp family transporter | YDC107_RS06615 | Not Available | Positive | 1340597 - 1341961 | 46763.6 |
| non-oxidative hydroxyarylic acid decarboxylases subunit d | YDC107_RS06620 | Not Available | Negative | 1342000 - 1342236 | 9180.06 |
| non-oxidative hydroxyarylic acid decarboxylases subunit c | YDC107_RS06625 | Not Available | Negative | 1342247 - 1343674 | 52397.8 |
| non-oxidative hydroxyarylic acid decarboxylases subunit b | YDC107_RS06630 | Not Available | Negative | 1343674 - 1344267 | 21529.3 |
| marr family winged helix-turn-helix transcriptional regulator | YDC107_RS06635 | Not Available | Positive | 1344414 - 1344821 | 15497.9 |
| rna polymerase sigma factor rpos | YDC107_RS06640 | Not Available | Negative | 1344942 - 1345934 | 37975.1 |
| murein hydrolase activator nlpd | YDC107_RS06645 | Not Available | Negative | 1345997 - 1347091 | 38595.3 |
| protein-l-isoaspartate o-methyltransferase | YDC107_RS06650 | Not Available | Negative | 1347276 - 1347902 | 23259.2 |
| 5'/3'-nucleotidase sure | YDC107_RS06655 | Not Available | Negative | 1347896 - 1348657 | 26902.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





