Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase transcriptional activator flha | YDC107_RS06565 | Not Available | Positive | 1329367 - 1331445 | 78417.5 |
| tobe domain-containing protein | YDC107_RS06570 | Not Available | Positive | 1331490 - 1331918 | 14450.5 |
| nitrous oxide-stimulated promoter family protein | YDC107_RS06575 | Not Available | Negative | 1331957 - 1332301 | 13535.7 |
| hypothetical protein | YDC107_RS27980 | Not Available | Negative | 1332378 - 1332512 | 4934.38 |
| dna mismatch repair protein muts | YDC107_RS06580 | Not Available | Positive | 1332588 - 1335149 | 95318.6 |
| protein-serine/threonine phosphatase | YDC107_RS06585 | Not Available | Positive | 1335255 - 1335911 | 25254.9 |
| dna-binding transcriptional repressor ygbi | YDC107_RS06590 | Not Available | Negative | 1335962 - 1336729 | 27408.2 |
| l-threonate dehydrogenase | YDC107_RS06595 | Not Available | Positive | 1336925 - 1337833 | 30692.0 |
| 3-oxo-tetronate kinase | YDC107_RS06600 | Not Available | Positive | 1337830 - 1339092 | 44952.7 |
| aldolase | YDC107_RS06605 | Not Available | Positive | 1339089 - 1339727 | 23223.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





