Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase subunit hyce | YDC107_RS06510 | Not Available | Negative | 1319791 - 1321500 | 64968.0 |
| formate hydrogenlyase subunit hycd | YDC107_RS06515 | Not Available | Negative | 1321518 - 1322441 | 33059.4 |
| formate hydrogenlyase subunit 3 | YDC107_RS06520 | Not Available | Negative | 1322444 - 1324270 | 64140.2 |
| formate hydrogenlyase subunit hycb | YDC107_RS06525 | Not Available | Negative | 1324267 - 1324878 | 21874.4 |
| formate hydrogenlyase regulator hyca | YDC107_RS06530 | Not Available | Negative | 1325003 - 1325464 | 17627.9 |
| hydrogenase maturation nickel metallochaperone hypa | YDC107_RS06540 | Not Available | Positive | 1325676 - 1326026 | 13168.9 |
| hydrogenase nickel incorporation protein hypb | YDC107_RS06545 | Not Available | Positive | 1326030 - 1326902 | 31596.9 |
| hydrogenase 3 maturation protein hypc | YDC107_RS06550 | Not Available | Positive | 1326893 - 1327165 | 9732.58 |
| hydrogenase formation protein hypd | YDC107_RS06555 | Not Available | Positive | 1327165 - 1328286 | 41383.7 |
| hydrogenase maturation carbamoyl dehydratase hype | YDC107_RS06560 | Not Available | Positive | 1328283 - 1329293 | 35064.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





