Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is1380-like element isecp1 family transposase | YDC107_RS06310 | Not Available | Positive | 1283646 - 1284908 | 48559.7 |
| multidrug efflux transporter emrab transcriptional repressor emrr | YDC107_RS06315 | Not Available | Positive | 1285211 - 1285741 | 20564.7 |
| multidrug efflux mfs transporter periplasmic adaptor subunit emra | YDC107_RS06320 | Not Available | Positive | 1285868 - 1287040 | 42712.5 |
| multidrug efflux mfs transporter permease subunit emrb | YDC107_RS06325 | Not Available | Positive | 1287057 - 1288595 | 55627.7 |
| s-ribosylhomocysteine lyase | YDC107_RS06330 | Not Available | Negative | 1288659 - 1289174 | 19417.3 |
| glutamate--cysteine ligase | YDC107_RS06335 | Not Available | Negative | 1289324 - 1290880 | 58380.7 |
| yqaa family protein | YDC107_RS06340 | Not Available | Negative | 1290953 - 1291381 | 15590.6 |
| fructose-1-phosphate/6-phosphogluconate phosphatase | YDC107_RS06345 | Not Available | Negative | 1291378 - 1291944 | 20785.1 |
| Trna-arg | Not Available | Not Available | Positive | 1292155 - 1292231 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1292334 - 1292410 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





