Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gaba permease | YDC107_RS06210 | Not Available | Positive | 1266764 - 1268164 | 51083.1 |
| dna-binding transcriptional regulator csir | YDC107_RS06215 | Not Available | Positive | 1268185 - 1268847 | 25011.4 |
| potassium binding protein kbp | YDC107_RS06220 | Not Available | Negative | 1268848 - 1269297 | 16092.0 |
| yqae/pmp3 family membrane protein | YDC107_RS06225 | Not Available | Negative | 1269381 - 1269539 | 5865.57 |
| arsr/smtb family transcription factor | YDC107_RS06230 | Not Available | Positive | 1269722 - 1270021 | 10596.9 |
| thiosulfate sulfurtransferase ygap | YDC107_RS06235 | Not Available | Positive | 1270031 - 1270555 | 18658.9 |
| dna-binding protein stpa | YDC107_RS06240 | Not Available | Negative | 1270602 - 1271006 | 15348.4 |
| l-alanine exporter alae | YDC107_RS06245 | Not Available | Positive | 1271673 - 1272122 | 16968.1 |
| duf2002 family protein | YDC107_RS06250 | Not Available | Negative | 1272159 - 1272503 | 13066.5 |
| duf883 domain-containing protein | YDC107_RS06255 | Not Available | Positive | 1272655 - 1272984 | 11817.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





