Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ypjd | YDC107_RS06110 | Not Available | Positive | 1242398 - 1243189 | 29263.9 |
| hlyc/corc family transporter | YDC107_RS06115 | Not Available | Positive | 1243210 - 1244496 | 48047.2 |
| nucleotide exchange factor grpe | YDC107_RS06120 | Not Available | Negative | 1244551 - 1245144 | 21813.1 |
| nad(+) kinase | YDC107_RS06125 | Not Available | Positive | 1245267 - 1246145 | 32628.3 |
| dna repair protein recn | YDC107_RS06130 | Not Available | Positive | 1246231 - 1247892 | 61335.0 |
| outer membrane protein assembly factor bame | YDC107_RS06135 | Not Available | Positive | 1248041 - 1248382 | 12302.8 |
| rnfh family protein | YDC107_RS06140 | Not Available | Negative | 1248444 - 1248734 | 10790.0 |
| type ii toxin-antitoxin system toxin rata | YDC107_RS06145 | Not Available | Negative | 1248724 - 1249161 | 16220.6 |
| ssra-binding protein smpb | YDC107_RS06150 | Not Available | Positive | 1249332 - 1249814 | 18254.1 |
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 1250029 - 1250391 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





