Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative transcriptional regulator | YDC107_RS05540 | Not Available | Positive | 1110115 - 1110363 | 9545.42 |
| Putative transcriptional activator | YDC107_RS05545 | Not Available | Positive | 1110521 - 1110772 | 9192.2 |
| Putative adenine methylase | YDC107_RS05550 | Not Available | Positive | 1110765 - 1111415 | 24309.4 |
| Hypothetical protein | YDC107_RS05555 | Not Available | Positive | 1111412 - 1111606 | 7010.24 |
| Putative integrase | YDC107_RS05560 | Not Available | Negative | 1111610 - 1112860 | 46986.8 |
| glutamine-hydrolyzing gmp synthase | YDC107_RS05565 | Not Available | Negative | 1113053 - 1114630 | 58668.5 |
| Orf012 | YDC107_RS05570 | Not Available | Negative | 1114699 - 1116165 | 51998.6 |
| Attr | Not Available | Not Available | Positive | 1126046 - 1126057 | Not Available |
| Attl | Not Available | Not Available | Positive | 1615697 - 1615708 | Not Available |
| Prophage p4 integrase | YDC107_RS07955 | Not Available | Positive | 1620792 - 1622057 | 47961.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





