Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 1223890 - 1223965 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1224051 - 1225592 | Not Available |
| atp-dependent chaperone clpb | YDC107_RS06020 | Not Available | Negative | 1226035 - 1228608 | 95590.8 |
| purine nucleoside phosphorylase yfih | YDC107_RS06025 | Not Available | Negative | 1228738 - 1229469 | 26376.5 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | YDC107_RS06030 | Not Available | Negative | 1229466 - 1230446 | 37109.8 |
| outer membrane protein assembly factor bamd | YDC107_RS06035 | Not Available | Positive | 1230581 - 1231318 | 27829.9 |
| ribosome-associated translation inhibitor raia | YDC107_RS06040 | Not Available | Positive | 1231589 - 1231930 | 12785.3 |
| phea operon leader peptide phel | YDC107_RS06045 | Not Available | Positive | 1232034 - 1232081 | 1912.35 |
| bifunctional chorismate mutase/prephenate dehydratase | YDC107_RS06050 | Not Available | Positive | 1232180 - 1233340 | 43156.9 |
| bifunctional chorismate mutase/prephenate dehydrogenase | YDC107_RS06055 | Not Available | Negative | 1233383 - 1234504 | 42025.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





