Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i toxin-antitoxin system toxin shob | YDC107_RS05860 | Not Available | Negative | 1193338 - 1193418 | 3103.22 |
| holo-acp synthase | YDC107_RS05865 | Not Available | Negative | 1193838 - 1194218 | 14125.2 |
| pyridoxine 5'-phosphate synthase | YDC107_RS05870 | Not Available | Negative | 1194218 - 1194949 | 26369.9 |
| dna repair protein reco | YDC107_RS05875 | Not Available | Negative | 1194961 - 1195689 | 27392.2 |
| gtpase era | YDC107_RS05880 | Not Available | Negative | 1195701 - 1196606 | 33798.1 |
| ribonuclease iii | YDC107_RS05885 | Not Available | Negative | 1196603 - 1197283 | 25551.6 |
| signal peptidase i | YDC107_RS05890 | Not Available | Negative | 1197556 - 1198530 | 35948.3 |
| translation elongation factor 4 | YDC107_RS05895 | Not Available | Negative | 1198546 - 1200345 | 66560.1 |
| soxr-reducing system protein rsec | YDC107_RS05900 | Not Available | Negative | 1200543 - 1201022 | 16629.3 |
| sigma-e factor regulatory protein rseb | YDC107_RS05905 | Not Available | Negative | 1201019 - 1201975 | 35751.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





