Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inositol-1-monophosphatase | YDC107_RS05710 | Not Available | Positive | 1156796 - 1157599 | 29173.8 |
| alpha/beta hydrolase | YDC107_RS05715 | Not Available | Positive | 1157744 - 1158598 | 31584.8 |
| stationary phase inducible protein csie | YDC107_RS05720 | Not Available | Positive | 1158789 - 1160069 | 49064.4 |
| 3-phenylpropionate mfs transporter | YDC107_RS05725 | Not Available | Negative | 1160061 - 1161200 | 41597.2 |
| dna-binding transcriptional regulator hcar | YDC107_RS05730 | Not Available | Negative | 1161360 - 1162250 | 32813.2 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha | YDC107_RS05735 | Not Available | Positive | 1162386 - 1163747 | 51111.8 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | YDC107_RS05740 | Not Available | Positive | 1163744 - 1164262 | 20522.3 |
| bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | YDC107_RS05745 | Not Available | Positive | 1164262 - 1164582 | 11315.3 |
| 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | YDC107_RS05750 | Not Available | Positive | 1164579 - 1165391 | 28569.4 |
| phenylpropionate dioxygenase ferredoxin reductase subunit | YDC107_RS05755 | Not Available | Positive | 1165401 - 1166603 | 43798.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





