Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase pepb | YDC107_RS05660 | Not Available | Negative | 1148730 - 1150013 | 46284.7 |
| fe-s cluster assembly protein iscx | YDC107_RS05665 | Not Available | Negative | 1150072 - 1150272 | 7731.92 |
| isc system 2fe-2s type ferredoxin | YDC107_RS05670 | Not Available | Negative | 1150284 - 1150619 | 12359.5 |
| fe-s protein assembly chaperone hsca | YDC107_RS05675 | Not Available | Negative | 1150621 - 1152471 | 65686.3 |
| co-chaperone hscb | YDC107_RS05680 | Not Available | Negative | 1152488 - 1153003 | 20085.8 |
| iron-sulfur cluster assembly protein isca | YDC107_RS05685 | Not Available | Negative | 1153099 - 1153422 | 11556.7 |
| fe-s cluster assembly scaffold iscu | YDC107_RS05690 | Not Available | Negative | 1153439 - 1153825 | 13849.3 |
| cysteine desulfurase | YDC107_RS05695 | Not Available | Negative | 1153853 - 1155067 | 45092.2 |
| fe-s cluster assembly transcriptional regulator iscr | YDC107_RS05700 | Not Available | Negative | 1155179 - 1155667 | 17337.6 |
| trna (cytosine(32)/uridine(32)-2'-o)-methyltransferase trmj | YDC107_RS05705 | Not Available | Negative | 1155937 - 1156677 | 27049.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





