Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidine--trna ligase | YDC107_RS05615 | Not Available | Negative | 1133040 - 1134314 | 47032.2 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | YDC107_RS05620 | Not Available | Negative | 1134425 - 1135543 | 40700.1 |
| cytoskeleton protein rodz | YDC107_RS05625 | Not Available | Negative | 1135570 - 1136583 | 36176.5 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | YDC107_RS05630 | Not Available | Negative | 1136868 - 1138022 | 43088.0 |
| nucleoside-diphosphate kinase | YDC107_RS05635 | Not Available | Negative | 1138172 - 1138603 | 15464.3 |
| peptidoglycan glycosyltransferase pbpc | YDC107_RS05640 | Not Available | Negative | 1138752 - 1141064 | 84946.7 |
| alpha2-macroglobulin | YDC107_RS05645 | Not Available | Negative | 1141065 - 1146023 | 181483.0 |
| 3-mercaptopyruvate sulfurtransferase | YDC107_RS05650 | Not Available | Positive | 1146230 - 1147075 | 30881.5 |
| small toxic inner membrane protein timp | YDC107_RS28335 | Not Available | Positive | 1147678 - 1147803 | 4531.63 |
| enhanced serine sensitivity protein sseb | YDC107_RS05655 | Not Available | Negative | 1147835 - 1148611 | 28628.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





