Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate transporter focb | YDC107_RS05245 | Not Available | Positive | 1057935 - 1058783 | 30589.4 |
| ai-2e family transporter | YDC107_RS05250 | Not Available | Negative | 1058820 - 1059881 | 39210.9 |
| beta-barrel assembly-enhancing protease | YDC107_RS05255 | Not Available | Positive | 1060094 - 1061557 | 53897.1 |
| arsenate reductase (glutaredoxin) | YDC107_RS05260 | Not Available | Positive | 1061578 - 1061937 | 13417.4 |
| dnaa inactivator hda | YDC107_RS05265 | Not Available | Negative | 1062043 - 1062744 | 26634.2 |
| uracil permease | YDC107_RS05270 | Not Available | Negative | 1062839 - 1064128 | 45081.0 |
| uracil phosphoribosyltransferase | YDC107_RS05275 | Not Available | Negative | 1064214 - 1064840 | 22534.6 |
| phosphoribosylformylglycinamidine cyclo-ligase | YDC107_RS05280 | Not Available | Positive | 1065165 - 1066202 | 36875.2 |
| phosphoribosylglycinamide formyltransferase | YDC107_RS05285 | Not Available | Positive | 1066202 - 1066840 | 23225.6 |
| polyphosphate kinase 1 | YDC107_RS05290 | Not Available | Positive | 1067011 - 1069077 | 80436.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





