Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase 4 subunit b | YDC107_RS05195 | Not Available | Positive | 1045771 - 1047789 | 72700.6 |
| hydrogenase 4 subunit hyfc | YDC107_RS05200 | Not Available | Positive | 1047800 - 1048747 | 34288.3 |
| hydrogenase 4 subunit hyfd | YDC107_RS05205 | Not Available | Positive | 1048764 - 1050203 | 51771.7 |
| hydrogenase 4 membrane subunit | YDC107_RS05210 | Not Available | Positive | 1050215 - 1050865 | 23393.0 |
| hydrogenase 4 subunit f | YDC107_RS05215 | Not Available | Positive | 1050870 - 1052450 | 56524.3 |
| hydrogenase 4 catalytic subunit hyfg | YDC107_RS05220 | Not Available | Positive | 1052440 - 1054155 | 65072.1 |
| hydrogenase 4 subunit h | YDC107_RS05225 | Not Available | Positive | 1054165 - 1054710 | 20174.4 |
| hydrogenase 4 catalytic subunit hyfi | YDC107_RS05230 | Not Available | Positive | 1054707 - 1055465 | 28042.8 |
| hydrogenase 4 assembly chaperone hyfj | YDC107_RS05235 | Not Available | Positive | 1055458 - 1055871 | 15622.0 |
| dna-binding transcriptional regulator hyfr | YDC107_RS05240 | Not Available | Positive | 1055901 - 1057913 | 75359.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





