Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ypfn family protein | YDC107_RS05145 | Not Available | Positive | 1036744 - 1036944 | 8071.78 |
| esterase | YDC107_RS05150 | Not Available | Negative | 1037025 - 1037723 | 24849.4 |
| trna cytosine(34) acetyltransferase tmca | YDC107_RS05155 | Not Available | Negative | 1037797 - 1039812 | 74773.5 |
| neutral zinc metallopeptidase | YDC107_RS05160 | Not Available | Negative | 1039827 - 1040690 | 31462.0 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | YDC107_RS05165 | Not Available | Negative | 1040858 - 1041571 | 26996.5 |
| outer membrane protein assembly factor bamc | YDC107_RS05170 | Not Available | Negative | 1041784 - 1042818 | 36844.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | YDC107_RS05175 | Not Available | Negative | 1042835 - 1043713 | 31266.8 |
| glycine cleavage system transcriptional repressor | YDC107_RS05180 | Not Available | Positive | 1043859 - 1044431 | 20769.8 |
| thioredoxin-dependent thiol peroxidase | YDC107_RS05185 | Not Available | Positive | 1044431 - 1044901 | 17634.9 |
| hydrogenase 4 subunit hyfa | YDC107_RS05190 | Not Available | Positive | 1045154 - 1045771 | 22159.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





