Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transaldolase | YDC107_RS05095 | Not Available | Positive | 1022640 - 1023590 | 35688.8 |
| transketolase | YDC107_RS05100 | Not Available | Positive | 1023610 - 1025613 | 72987.8 |
| duf1176 domain-containing protein | YDC107_RS05105 | Not Available | Negative | 1025716 - 1026759 | 38706.4 |
| gdp-mannose pyrophosphatase nudk | YDC107_RS05110 | Not Available | Negative | 1026885 - 1027460 | 21764.1 |
| formate-dependent uric acid utilization protein aega | YDC107_RS05115 | Not Available | Negative | 1027528 - 1029507 | 71950.2 |
| nitrate/nitrite two-component system sensor histidine kinase narq | YDC107_RS05120 | Not Available | Positive | 1029713 - 1031413 | 63673.7 |
| multidrug efflux rnd transporter permease acrd | YDC107_RS05125 | Not Available | Positive | 1031577 - 1034690 | 113084.0 |
| protein ypfm | YDC107_RS05130 | Not Available | Negative | 1034789 - 1034848 | 2408.02 |
| arsc family reductase | YDC107_RS05135 | Not Available | Positive | 1035229 - 1035585 | 13527.3 |
| succinyl-diaminopimelate desuccinylase | YDC107_RS05140 | Not Available | Positive | 1035589 - 1036716 | 41271.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





