Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite exporter taue/safe family protein | YDC107_RS04440 | Not Available | Negative | 893267 - 894076 | 28627.2 |
| penicillin-insensitive murein endopeptidase | YDC107_RS04445 | Not Available | Negative | 894076 - 894900 | 30170.4 |
| chorismate synthase | YDC107_RS04450 | Not Available | Negative | 894904 - 895989 | 39153.8 |
| 50s ribosomal protein l3 n(5)-glutamine methyltransferase | YDC107_RS04455 | Not Available | Negative | 896024 - 896956 | 35003.6 |
| endonuclease smrb | YDC107_RS04460 | Not Available | Positive | 897122 - 897673 | 21000.5 |
| stfh/yfco family fimbrial adhesin | YDC107_RS04465 | Not Available | Negative | 897743 - 898606 | 31804.9 |
| fimbrial protein | YDC107_RS04470 | Not Available | Negative | 898608 - 899153 | 19450.2 |
| fimbrial protein | YDC107_RS04475 | Not Available | Negative | 899150 - 899629 | 17354.5 |
| fimbrial protein | YDC107_RS04480 | Not Available | Negative | 899626 - 900117 | 17200.7 |
| fimbria/pilus periplasmic chaperone | YDC107_RS04485 | Not Available | Negative | 900133 - 900882 | 27768.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





