Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate acetyltransferase | YDC107_RS04290 | Not Available | Positive | 863313 - 865457 | 77162.5 |
| putative basic amino acid antiporter yfcc | YDC107_RS04295 | Not Available | Positive | 865647 - 867167 | 54800.0 |
| nudix hydrolase yfcd | YDC107_RS04300 | Not Available | Negative | 867200 - 867742 | 20376.9 |
| phosphodiesterase | YDC107_RS04305 | Not Available | Negative | 867800 - 868351 | 19992.1 |
| glutathione transferase | YDC107_RS04310 | Not Available | Negative | 868407 - 869051 | 24327.0 |
| gsh-dependent disulfide bond oxidoreductase | YDC107_RS04315 | Not Available | Positive | 869191 - 869838 | 24503.2 |
| dihydroneopterin triphosphate 2'-epimerase | YDC107_RS04320 | Not Available | Positive | 869895 - 870257 | 14082.8 |
| tigr01777 family oxidoreductase | YDC107_RS04325 | Not Available | Positive | 870278 - 871171 | 32709.7 |
| recombination-promoting nuclease rpnb | YDC107_RS04330 | Not Available | Negative | 871219 - 872121 | 34605.9 |
| histidine abc transporter atp-binding protein hisp | YDC107_RS04335 | Not Available | Negative | 872318 - 873091 | 28626.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





