Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | YDC107_RS04140 | Not Available | Negative | 829433 - 830191 | 27838.2 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | YDC107_RS04145 | Not Available | Negative | 830188 - 831858 | 61308.4 |
| isochorismate synthase menf | YDC107_RS04150 | Not Available | Negative | 831947 - 833242 | 48744.4 |
| stress response protein elab | YDC107_RS04155 | Not Available | Negative | 833321 - 833626 | 11306.3 |
| gnat family n-acetyltransferase | YDC107_RS04160 | Not Available | Negative | 833681 - 834142 | 17466.8 |
| ribonuclease bn | YDC107_RS04165 | Not Available | Positive | 834207 - 835124 | 32891.5 |
| s49 family peptidase | YDC107_RS04170 | Not Available | Positive | 835312 - 836522 | 43851.7 |
| m28 family metallopeptidase | YDC107_RS04175 | Not Available | Positive | 836903 - 837874 | 35885.7 |
| yfbm family protein | YDC107_RS04180 | Not Available | Positive | 837977 - 838480 | 18992.8 |
| nadh-quinone oxidoreductase subunit nuon | YDC107_RS04185 | Not Available | Negative | 838547 - 840004 | 52047.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





