Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein yfae | YDC107_RS03995 | Not Available | Positive | 799187 - 799441 | 9349.32 |
| lipopolysaccharide kinase inaa | YDC107_RS04000 | Not Available | Negative | 799495 - 800145 | 25313.5 |
| mfs transporter | YDC107_RS04005 | Not Available | Negative | 800226 - 801416 | 42807.0 |
| lysr family transcriptional regulator | YDC107_RS04010 | Not Available | Positive | 801568 - 802446 | 32663.0 |
| glycerophosphodiester phosphodiesterase | YDC107_RS04015 | Not Available | Negative | 802488 - 803564 | 40832.6 |
| glycerol-3-phosphate transporter | YDC107_RS04020 | Not Available | Negative | 803569 - 804927 | 50346.3 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit a | YDC107_RS04025 | Not Available | Positive | 805200 - 806828 | 58929.6 |
| glycerol-3-phosphate dehydrogenase subunit glpb | YDC107_RS04030 | Not Available | Positive | 806818 - 808077 | 45433.0 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit glpc | YDC107_RS04035 | Not Available | Positive | 808074 - 809264 | 44124.5 |
| isncy family transposase | YDC107_RS04040 | Not Available | Positive | 809457 - 810416 | 37115.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





