Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yfaq family protein | YDC107_RS03950 | Not Available | Negative | 778970 - 780619 | 61573.5 |
| alpha-2-macroglobulin family protein | YDC107_RS03955 | Not Available | Negative | 780620 - 785134 | 166812.0 |
| duf1175 domain-containing protein | YDC107_RS03960 | Not Available | Negative | 785158 - 785781 | 23752.5 |
| duf2138 domain-containing protein | YDC107_RS03965 | Not Available | Negative | 785778 - 787466 | 62674.7 |
| dna topoisomerase (atp-hydrolyzing) subunit a | YDC107_RS03970 | Not Available | Negative | 787615 - 790242 | 97008.4 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | YDC107_RS03975 | Not Available | Positive | 790389 - 791111 | 26557.0 |
| aida-i family autotransporter adhesin yfal/ehac | YDC107_RS03980 | Not Available | Negative | 791172 - 794930 | 131416.0 |
| protein ypab | YDC107_RS28630 | Not Available | Negative | 795355 - 795498 | 5295.47 |
| class 1a ribonucleoside-diphosphate reductase subunit alpha | YDC107_RS03985 | Not Available | Positive | 795626 - 797911 | 85722.9 |
| class ia ribonucleoside-diphosphate reductase subunit beta | YDC107_RS03990 | Not Available | Positive | 798057 - 799187 | 43519.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





