Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperone napd | YDC107_RS03855 | Not Available | Negative | 754268 - 754531 | 9469.03 |
| ferredoxin-type protein napf | YDC107_RS03860 | Not Available | Negative | 754521 - 755015 | 18048.3 |
| protein yojo | YDC107_RS28625 | Not Available | Positive | 755124 - 755288 | 6191.65 |
| serine protease inhibitor ecotin | YDC107_RS03865 | Not Available | Positive | 755421 - 755909 | 18151.9 |
| malate dehydrogenase (quinone) | YDC107_RS03870 | Not Available | Negative | 756059 - 757705 | 60320.1 |
| microcin j25 efflux abc transporter yoji | YDC107_RS03875 | Not Available | Negative | 757923 - 759566 | 61570.4 |
| dna oxidative demethylase alkb | YDC107_RS03880 | Not Available | Negative | 759642 - 760292 | 24064.8 |
| bifunctional dna-binding transcriptional regulator/o6-methylguanine-dna methyltransferase ada | YDC107_RS03885 | Not Available | Negative | 760292 - 761356 | 39297.9 |
| fad:protein fmn transferase apbe | YDC107_RS03890 | Not Available | Negative | 761430 - 762485 | 38642.0 |
| porin ompc | YDC107_RS03895 | Not Available | Negative | 762597 - 763685 | 40144.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





