Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c maturation protein ccme | YDC107_RS03805 | Not Available | Negative | 746419 - 746898 | 17699.4 |
| heme exporter protein ccmd | YDC107_RS03810 | Not Available | Negative | 746895 - 747104 | 7745.59 |
| heme exporter protein ccmc | YDC107_RS03815 | Not Available | Negative | 747101 - 747838 | 27886.9 |
| heme exporter protein ccmb | YDC107_RS03820 | Not Available | Negative | 747880 - 748542 | 23606.3 |
| cytochrome c biogenesis heme-transporting atpase ccma | YDC107_RS03825 | Not Available | Negative | 748539 - 749162 | 23040.6 |
| cytochrome c-type protein napc | YDC107_RS03830 | Not Available | Negative | 749175 - 749777 | 23101.8 |
| nitrate reductase cytochrome c-type subunit | YDC107_RS03835 | Not Available | Negative | 749787 - 750236 | 16297.4 |
| quinol dehydrogenase ferredoxin subunit naph | YDC107_RS03840 | Not Available | Negative | 750233 - 751096 | 31903.4 |
| ferredoxin-type protein napg | YDC107_RS03845 | Not Available | Negative | 751083 - 751778 | 24926.1 |
| nitrate reductase catalytic subunit napa | YDC107_RS03850 | Not Available | Negative | 751785 - 754271 | 93077.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





