Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic di-gmp phosphodiesterase | YDC107_RS03705 | Not Available | Positive | 722908 - 724464 | 58547.4 |
| extracellular solute-binding protein | YDC107_RS03710 | Not Available | Positive | 724546 - 726360 | 69695.6 |
| microcin c abc transporter permease yejb | YDC107_RS03715 | Not Available | Positive | 726361 - 727455 | 40362.6 |
| abc transporter permease | YDC107_RS03720 | Not Available | Positive | 727455 - 728480 | 38125.7 |
| microcin c abc transporter atp-binding protein yejf | YDC107_RS03725 | Not Available | Positive | 728482 - 730071 | 58636.6 |
| yejg family protein | YDC107_RS03730 | Not Available | Negative | 730075 - 730419 | 12525.9 |
| multidrug efflux mfs transporter bcr | YDC107_RS03735 | Not Available | Negative | 730752 - 731942 | 43369.4 |
| 16s rrna pseudouridine(516) synthase rsua | YDC107_RS03740 | Not Available | Negative | 731970 - 732665 | 25866.8 |
| dead/deah box helicase | YDC107_RS03745 | Not Available | Positive | 732815 - 734575 | 66546.0 |
| 50s ribosomal protein l25 | YDC107_RS03750 | Not Available | Positive | 734700 - 734984 | 10693.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





