Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain YDC107 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1284644 bp
Thymine Count
1281806 bp
Guanine Count
1314426 bp
Cytosine Count
1317435 bp
Genome Length
5198311 bp
Protein-coding Genes
4571 genes
Non-Coding Genes
468 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | YDC107_RS03555 | Not Available | Positive | 687687 - 688922 | 45024.3 |
| galactose/methyl galactoside abc transporter permease mglc | YDC107_RS03560 | Not Available | Negative | 688993 - 690003 | 35552.4 |
| galactose/methyl galactoside abc transporter atp-binding protein mgla | YDC107_RS03565 | Not Available | Negative | 690019 - 691539 | 56418.8 |
| galactose/glucose abc transporter substrate-binding protein mglb | YDC107_RS03570 | Not Available | Negative | 691600 - 692598 | 35714.5 |
| hth-type transcriptional regulator gals | YDC107_RS03575 | Not Available | Negative | 692878 - 693918 | 37258.0 |
| duf418 domain-containing protein yeib | YDC107_RS03580 | Not Available | Negative | 694060 - 695217 | 43384.2 |
| gtp cyclohydrolase i fole | YDC107_RS03585 | Not Available | Negative | 695234 - 695902 | 24832.1 |
| s-formylglutathione hydrolase | YDC107_RS03590 | Not Available | Positive | 696160 - 696996 | 31348.0 |
| catecholate siderophore receptor cira | YDC107_RS03595 | Not Available | Negative | 697027 - 699006 | 73372.9 |
| lysine-specific permease | YDC107_RS03600 | Not Available | Negative | 699298 - 700767 | 53579.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





