Escherichia coli strain YDC107

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain YDC107 is a Gram-negative, rod-shaped bacterium typically occurring in pairs or as single cells. This strain demonstrates a facultative anaerobic metabolism, allowing it to thrive in both aerobic and anaerobic environments. Optimal growth occurs at 37.0°C, which coincides with the average body temperature of warm-blooded hosts, suggesting its adaptation to a host-associated habitat. As a member of the Escherichia genus, strain YDC107 is likely to engage in various metabolic activities that can influence host physiology. Its facultative anaerobic nature indicates that it can utilize oxygen when available but can also ferment substrates in its absence, thereby supporting its survival in diverse environments within the host. This versatility may contribute to its persistence and potential interactions within the gut microbiome, where it may play roles in nutrient cycling or modulation of the host immune response. The positioning of E. coli strain YDC107 in host-associated habitats highlights the importance of understanding microbial interactions in health and disease contexts. Examining this strain's specific metabolic pathways and interactions could provide insights into its ecological roles and contributions to the overall microbial community dynamics within the host environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain YDC107

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain YDC107
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain YDC107


Gene Summary

Adenine Count

1284644 bp

Thymine Count

1281806 bp

Guanine Count

1314426 bp

Cytosine Count

1317435 bp

Genome Length

5198311 bp

Protein-coding Genes

4571 genes

Non-Coding Genes

468 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail componentYDC107_RS00005Not Available+49 - 43714191.7
Tail componentYDC107_RS00010Not Available+430 - 300589256.2
Tail componentYDC107_RS00015Not Available+3002 - 333011709.5
Tail componentYDC107_RS00020Not Available+3330 - 402625342.6
Tail fiber componentYDC107_RS00025Not Available+4032 - 477825562.2
Tail componentYDC107_RS00030Not Available+4775 - 534620829.5
Putative tail tip assembly proteinYDC107_RS28280Not Available+5408 - 8886126127.0
Putative lom-like outer membrane proteinYDC107_RS00070Not Available+8954 - 955321343.7
Tail fiber proteinYDC107_RS00075Not Available+9618 - 1199582656.6
Hypothetical proteinYDC107_RS00080Not Available+11995 - 1227610708.5

Displaying genes 1 – 10 of 5039 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites