Prodigiosinella confusarubida strain ATCC 39006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Prodigiosinella

Description

Prodigiosinella confusarubida strain ATCC 39006 is characterized by having a single replicon, indicating a streamlined genomic architecture. The strain is cataloged under the accession number NZ_CP025084.1, which provides a unique identifier for its genetic material in genomic databases. This bacterium belongs to a genus known for its production of the red pigment prodigiosin, a compound that has garnered interest due to its potential applications in pharmaceuticals and biotechnology. The presence of a single replicon may suggest a simplified regulatory mechanism and efficient replication process, which can be advantageous in various environmental conditions. Ecologically, Prodigiosinella confusarubida strain ATCC 39006 may play a role in its natural habitat that is yet to be fully explored. The ability to produce prodigiosin may offer ecological advantages, such as protection against microbial competitors or predators, as well as potential roles in interspecies signaling. Understanding the traits of this strain, specifically its genomic structure and metabolic capabilities, can provide insights into its ecological interactions and potential applications in microbial biotechnology. Further research could elucidate the environmental conditions that favor its growth and pigment production, contributing to our understanding of its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusProdigiosinella
SpeciesProdigiosinella confusarubida
Strainstrain ATCC 39006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prodigiosinella confusarubida strain ATCC 39006 chromosome,

Gene Summary

Adenine Count

1258865 bp

Thymine Count

1262010 bp

Guanine Count

1232112 bp

Cytosine Count

1218770 bp

Genome Length

4971757 bp

Protein-coding Genes

4260 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dipeptide abc transporter periplasmic-binding protein dppaSER39006_RS03135Not AvailablePositive678172 - 67977959992.9
dipeptide abc transporter permease dppbSER39006_RS03140Not AvailablePositive679988 - 68100737328.4
dipeptide abc transporter permease dppcSER39006_RS03145Not AvailablePositive681020 - 68192232447.6
dipeptide abc transporter atp-binding proteinSER39006_RS03150Not AvailablePositive681936 - 68291636115.0
dipeptide abc transporter atp-binding subunit dppfSER39006_RS03155Not AvailablePositive682913 - 68392037412.6
eama family transporterSER39006_RS03160Not AvailablePositive684215 - 68511732170.2
cellulose biosynthesis protein bcsoSER39006_RS03165Not AvailablePositive685568 - 68614320522.4
cellulose biosynthesis protein bcsqSER39006_RS03170Not AvailablePositive686134 - 68693128765.6
udp-forming cellulose synthase catalytic subunitSER39006_RS03175Not AvailablePositive687020 - 68914080074.3
cellulose biosynthesis cyclic di-gmp-binding regulatory protein bcsbSER39006_RS03180Not AvailablePositive689137 - 69163290509.4

Displaying genes 831 – 840 of 4525 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.