Prodigiosinella confusarubida strain ATCC 39006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Prodigiosinella

Description

Prodigiosinella confusarubida strain ATCC 39006 is characterized by having a single replicon, indicating a streamlined genomic architecture. The strain is cataloged under the accession number NZ_CP025084.1, which provides a unique identifier for its genetic material in genomic databases. This bacterium belongs to a genus known for its production of the red pigment prodigiosin, a compound that has garnered interest due to its potential applications in pharmaceuticals and biotechnology. The presence of a single replicon may suggest a simplified regulatory mechanism and efficient replication process, which can be advantageous in various environmental conditions. Ecologically, Prodigiosinella confusarubida strain ATCC 39006 may play a role in its natural habitat that is yet to be fully explored. The ability to produce prodigiosin may offer ecological advantages, such as protection against microbial competitors or predators, as well as potential roles in interspecies signaling. Understanding the traits of this strain, specifically its genomic structure and metabolic capabilities, can provide insights into its ecological interactions and potential applications in microbial biotechnology. Further research could elucidate the environmental conditions that favor its growth and pigment production, contributing to our understanding of its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusProdigiosinella
SpeciesProdigiosinella confusarubida
Strainstrain ATCC 39006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prodigiosinella confusarubida strain ATCC 39006 chromosome,

Gene Summary

Adenine Count

1258865 bp

Thymine Count

1262010 bp

Guanine Count

1232112 bp

Cytosine Count

1218770 bp

Genome Length

4971757 bp

Protein-coding Genes

4260 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atpase ravaSER39006_RS02485Not AvailablePositive541661 - 54315757668.3
atpase rava stimulator viaaSER39006_RS02490Not AvailablePositive543163 - 54463857074.9
transcriptional regulator asncSER39006_RS02495Not AvailablePositive544800 - 54526117119.9
fmn-binding protein miocSER39006_RS02500Not AvailablePositive545352 - 54579516194.3
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgSER39006_RS02505Not AvailablePositive546172 - 54806169987.3
16s rrna (guanine(527)-n(7))-methyltransferase rsmgSER39006_RS02510Not AvailablePositive548148 - 54876823367.4
f0f1 atp synthase subunit iSER39006_RS02515Not AvailablePositive549392 - 54977513683.3
f0f1 atp synthase subunit aSER39006_RS02520Not AvailablePositive549798 - 55058028890.5
f0f1 atp synthase subunit cSER39006_RS02525Not AvailablePositive550631 - 5508708211.64
f0f1 atp synthase subunit bSER39006_RS02530Not AvailablePositive550932 - 55140217361.0

Displaying genes 701 – 710 of 4525 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.