Prodigiosinella confusarubida strain ATCC 39006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Prodigiosinella

Description

Prodigiosinella confusarubida strain ATCC 39006 is characterized by having a single replicon, indicating a streamlined genomic architecture. The strain is cataloged under the accession number NZ_CP025084.1, which provides a unique identifier for its genetic material in genomic databases. This bacterium belongs to a genus known for its production of the red pigment prodigiosin, a compound that has garnered interest due to its potential applications in pharmaceuticals and biotechnology. The presence of a single replicon may suggest a simplified regulatory mechanism and efficient replication process, which can be advantageous in various environmental conditions. Ecologically, Prodigiosinella confusarubida strain ATCC 39006 may play a role in its natural habitat that is yet to be fully explored. The ability to produce prodigiosin may offer ecological advantages, such as protection against microbial competitors or predators, as well as potential roles in interspecies signaling. Understanding the traits of this strain, specifically its genomic structure and metabolic capabilities, can provide insights into its ecological interactions and potential applications in microbial biotechnology. Further research could elucidate the environmental conditions that favor its growth and pigment production, contributing to our understanding of its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusProdigiosinella
SpeciesProdigiosinella confusarubida
Strainstrain ATCC 39006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prodigiosinella confusarubida strain ATCC 39006 chromosome,

Gene Summary

Adenine Count

1258865 bp

Thymine Count

1262010 bp

Guanine Count

1232112 bp

Cytosine Count

1218770 bp

Genome Length

4971757 bp

Protein-coding Genes

4260 genes

Non-Coding Genes

265 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts phosphocarrier protein nprSER39006_RS00525Not AvailablePositive112970 - 1132429922.83
nucleoside diphosphate kinase regulatorSER39006_RS00530Not AvailablePositive113417 - 11382715165.0
metalloprotease pmbaSER39006_RS00535Not AvailableNegative113892 - 11523248072.1
ribosome biogenesis factor yjgaSER39006_RS00540Not AvailablePositive115422 - 11597621445.3
tryptophan--trna ligaseSER39006_RS00545Not AvailableNegative116067 - 11707137662.1
phosphoglycolate phosphataseSER39006_RS00550Not AvailableNegative117068 - 11777225094.3
ribulose-phosphate 3-epimeraseSER39006_RS00555Not AvailableNegative117765 - 11844224526.8
adenine-specific dna-methyltransferaseSER39006_RS00560Not AvailableNegative118574 - 11938931639.5
spor domain-containing proteinSER39006_RS00565Not AvailableNegative119468 - 12047235581.1
3-dehydroquinate synthaseSER39006_RS00570Not AvailableNegative120608 - 12169338990.5

Displaying genes 311 – 320 of 4525 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.