Paracoccus yeei strain TT13

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei strain TT13 is a Gram-negative, cocci-shaped bacterium that thrives in soil environments. As a chemoheterotroph, it derives its energy from organic compounds, which positions it as a key player in nutrient cycling within its habitat. This organism is classified as an aerobe, indicating its requirement for oxygen to sustain metabolic processes. In terms of mobility, Paracoccus yeei strain TT13 does not exhibit movement, despite the presence of flagella, which are typically associated with motility in other bacterial species. Its mesophilic nature suggests that it grows optimally at moderate temperatures, though specific temperature ranges are not detailed. The genetic makeup of Paracoccus yeei strain TT13 includes seven replicons, a feature that could reflect its adaptability and potential for genetic diversity. Notably, this strain is nonsporulating, indicating that it does not form spores, which may limit its ability to withstand extreme environmental conditions compared to sporulating bacteria. The accession numbers associated with this strain, including NZ_CP024422.1 through NZ_CP024428.1, provide a pathway for further genomic exploration and characterization. Understanding the ecological role of Paracoccus yeei strain TT13 in soil ecosystems can enhance our knowledge of microbial interactions and nutrient dynamics, emphasizing its importance in maintaining soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
Strainstrain TT13

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei strain TT13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

4401 bp

Thymine Count

4485 bp

Guanine Count

7864 bp

Cytosine Count

7817 bp

Genome Length

24567 bp

Protein-coding Genes

29 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPYTT13_RS20605Not AvailableNegative42857 - 431209140.05
transposasePYTT13_RS20610Not AvailablePositive43285 - 4431438539.6
is110 family transposasePYTT13_RS20615Not AvailableNegative44578 - 4558236635.1
transposasePYTT13_RS20620Not AvailablePositive45687 - 458516508.76
sulfite exporter taue/safe family proteinPYTT13_RS20625Not AvailableNegative45985 - 4672525452.3
lysr family transcriptional regulatorPYTT13_RS20630Not AvailablePositive46823 - 4770431102.0
alpha/beta fold hydrolasePYTT13_RS20635Not AvailableNegative47640 - 4860836281.6
tetr/acrr family transcriptional regulatorPYTT13_RS20640Not AvailablePositive48669 - 4926822116.6
phox family proteinPYTT13_RS20645Not AvailablePositive49408 - 5139972085.7
is3 family transposasePYTT13_RS20650Not AvailablePositive51516 - 5270544699.2

Displaying genes 71 – 80 of 4589 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

318 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 318 metabolites

Health Effects

No health effects information available for this bacterium.