Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative, anaerobic spirochete characterized by its spiral shape and presence of flagella. This strain is classified as mesophilic, indicating that it thrives at moderate temperatures. It typically exists in a single-cell arrangement and possesses a single replicon, which is a noteworthy feature for its genetic structure. The habitat of strain K363 is associated with hosts, reflecting its biotic relationship as free-living. This connection suggests that the organism may have specific interactions with host organisms, although the details of these interactions are not elaborated. The presence of two membranes is characteristic of Gram-negative bacteria, contributing to its structural integrity and possibly influencing its pathogenicity. However, the strain is noted for its lack of mobility, which may have implications for its mode of transmission and ecological niche. In summary, Treponema pallidum subsp. pertenue strain Kampung Dalan K363 exemplifies a specialized microbial life form that thrives in host-associated environments. Its anaerobic nature, coupled with its structural features, indicates adaptations to specific ecological conditions. Understanding these traits can provide insights into the survival strategies and ecological roles of this strain within its habitat. Accessions for this strain include NZ_CP024088.1, which can be utilized for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
Strainsubsp. pertenue strain Kampung Dalan K363

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pertenue strain Kampung Dalan K363
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gene Summary

Adenine Count

268148 bp

Thymine Count

269857 bp

Guanine Count

302737 bp

Cytosine Count

298790 bp

Genome Length

1139764 bp

Protein-coding Genes

990 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma factor antagonistTPEKDK363_RS02775Not AvailablePositive583641 - 58400613371.5
gtpase eraTPEKDK363_RS02785Not AvailablePositive584136 - 58509535770.4
diphosphate--fructose-6-phosphate 1-phosphotransferaseTPEKDK363_RS02790Not AvailableNegative585092 - 58681362444.6
holliday junction branch migration protein ruvaTPEKDK363_RS02795Not AvailableNegative586873 - 58755624400.4
endonuclease/exonuclease/phosphatase family proteinTPEKDK363_RS02800Not AvailableNegative587598 - 58947268397.9
galactose abc transporter substrate-binding proteinTPEKDK363_RS02805Not AvailableNegative589497 - 59056138367.4
s1c family serine proteaseTPEKDK363_RS02810Not AvailableNegative590646 - 59236162737.7
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseTPEKDK363_RS02815Not AvailableNegative592358 - 59348838886.9
upf0164 family proteinTPEKDK363_RS02825Not AvailablePositive593632 - 59493046864.8
atp-dependent clp protease atp-binding subunitTPEKDK363_RS02835Not AvailablePositive595080 - 59752491588.0

Displaying genes 541 – 550 of 1044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Endemic syphilisCausesPMC10497860
YawsCausesPMC10497860

Displaying health effects 1 – 2 of 2 in total