Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative, anaerobic spirochete characterized by its spiral shape and presence of flagella. This strain is classified as mesophilic, indicating that it thrives at moderate temperatures. It typically exists in a single-cell arrangement and possesses a single replicon, which is a noteworthy feature for its genetic structure. The habitat of strain K363 is associated with hosts, reflecting its biotic relationship as free-living. This connection suggests that the organism may have specific interactions with host organisms, although the details of these interactions are not elaborated. The presence of two membranes is characteristic of Gram-negative bacteria, contributing to its structural integrity and possibly influencing its pathogenicity. However, the strain is noted for its lack of mobility, which may have implications for its mode of transmission and ecological niche. In summary, Treponema pallidum subsp. pertenue strain Kampung Dalan K363 exemplifies a specialized microbial life form that thrives in host-associated environments. Its anaerobic nature, coupled with its structural features, indicates adaptations to specific ecological conditions. Understanding these traits can provide insights into the survival strategies and ecological roles of this strain within its habitat. Accessions for this strain include NZ_CP024088.1, which can be utilized for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
Strainsubsp. pertenue strain Kampung Dalan K363

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pertenue strain Kampung Dalan K363
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gene Summary

Adenine Count

268148 bp

Thymine Count

269857 bp

Guanine Count

302737 bp

Cytosine Count

298790 bp

Genome Length

1139764 bp

Protein-coding Genes

990 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseTPEKDK363_RS02620Not AvailablePositive549566 - 55081344002.1
trk system potassium transporter trkaTPEKDK363_RS02625Not AvailablePositive550851 - 55228751104.3
excinuclease abc subunit uvraTPEKDK363_RS02630Not AvailablePositive552401 - 555283106017.0
lps-assembly protein lptdTPEKDK363_RS02635Not AvailablePositive555280 - 558255112447.0
murein biosynthesis integral membrane protein murjTPEKDK363_RS02640Not AvailableNegative558269 - 55984958055.7
crossover junction endodeoxyribonuclease ruvcTPEKDK363_RS02645Not AvailableNegative559846 - 56043620943.4
thiamine diphosphokinaseTPEKDK363_RS02650Not AvailableNegative560418 - 56111025568.4
sigma-54-dependent transcriptional regulatorTPEKDK363_RS02655Not AvailableNegative561107 - 56248350965.9
atp-binding proteinTPEKDK363_RS05435Not AvailableNegative562493 - 56284912921.5
histidine kinase dimerization/phospho-acceptor domain-containing proteinTPEKDK363_RS02660Not AvailableNegative562858 - 56368231493.8

Displaying genes 511 – 520 of 1044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Endemic syphilisCausesPMC10497860
YawsCausesPMC10497860

Displaying health effects 1 – 2 of 2 in total