Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative, anaerobic spirochete characterized by its spiral shape and presence of flagella. This strain is classified as mesophilic, indicating that it thrives at moderate temperatures. It typically exists in a single-cell arrangement and possesses a single replicon, which is a noteworthy feature for its genetic structure. The habitat of strain K363 is associated with hosts, reflecting its biotic relationship as free-living. This connection suggests that the organism may have specific interactions with host organisms, although the details of these interactions are not elaborated. The presence of two membranes is characteristic of Gram-negative bacteria, contributing to its structural integrity and possibly influencing its pathogenicity. However, the strain is noted for its lack of mobility, which may have implications for its mode of transmission and ecological niche. In summary, Treponema pallidum subsp. pertenue strain Kampung Dalan K363 exemplifies a specialized microbial life form that thrives in host-associated environments. Its anaerobic nature, coupled with its structural features, indicates adaptations to specific ecological conditions. Understanding these traits can provide insights into the survival strategies and ecological roles of this strain within its habitat. Accessions for this strain include NZ_CP024088.1, which can be utilized for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
Strainsubsp. pertenue strain Kampung Dalan K363

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pertenue strain Kampung Dalan K363
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gene Summary

Adenine Count

268148 bp

Thymine Count

269857 bp

Guanine Count

302737 bp

Cytosine Count

298790 bp

Genome Length

1139764 bp

Protein-coding Genes

990 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stas domain-containing proteinTPEKDK363_RS01145Not AvailablePositive226975 - 22730111771.1
m15 family metallopeptidaseTPEKDK363_RS01150Not AvailablePositive227288 - 22808530122.1
hypothetical proteinTPEKDK363_RS01155Not AvailablePositive228110 - 22854115598.3
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeTPEKDK363_RS01160Not AvailablePositive228678 - 23011751890.7
leucine-rich repeat domain-containing proteinTPEKDK363_RS01165Not AvailablePositive230304 - 23104426642.8
16s ribosomal rnaNot AvailableNot AvailablePositive231228 - 232776Not Available
Trna-ileNot AvailableNot AvailablePositive232889 - 232962Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive233072 - 236024Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive236073 - 236183Not Available
energy-coupling factor abc transporter atp-binding proteinTPEKDK363_RS01195Not AvailableNegative236936 - 23770327335.9

Displaying genes 221 – 230 of 1044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Endemic syphilisCausesPMC10497860
YawsCausesPMC10497860

Displaying health effects 1 – 2 of 2 in total