Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative, anaerobic spirochete characterized by its spiral shape and presence of flagella. This strain is classified as mesophilic, indicating that it thrives at moderate temperatures. It typically exists in a single-cell arrangement and possesses a single replicon, which is a noteworthy feature for its genetic structure. The habitat of strain K363 is associated with hosts, reflecting its biotic relationship as free-living. This connection suggests that the organism may have specific interactions with host organisms, although the details of these interactions are not elaborated. The presence of two membranes is characteristic of Gram-negative bacteria, contributing to its structural integrity and possibly influencing its pathogenicity. However, the strain is noted for its lack of mobility, which may have implications for its mode of transmission and ecological niche. In summary, Treponema pallidum subsp. pertenue strain Kampung Dalan K363 exemplifies a specialized microbial life form that thrives in host-associated environments. Its anaerobic nature, coupled with its structural features, indicates adaptations to specific ecological conditions. Understanding these traits can provide insights into the survival strategies and ecological roles of this strain within its habitat. Accessions for this strain include NZ_CP024088.1, which can be utilized for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
Strainsubsp. pertenue strain Kampung Dalan K363

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pertenue strain Kampung Dalan K363
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gene Summary

Adenine Count

268148 bp

Thymine Count

269857 bp

Guanine Count

302737 bp

Cytosine Count

298790 bp

Genome Length

1139764 bp

Protein-coding Genes

990 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
manganese/iron-sensitive transcriptional repressor trorTPEKDK363_RS00895Not AvailablePositive189593 - 19005417122.8
2,3-diphosphoglycerate-dependent phosphoglycerate mutaseTPEKDK363_RS00900Not AvailablePositive190134 - 19088928359.8
Trna-metNot AvailableNot AvailablePositive191015 - 191087Not Available
5'-methylthioadenosine/adenosylhomocysteine nucleosidaseTPEKDK363_RS00910Not AvailablePositive191208 - 19201728667.6
fmn-binding proteinTPEKDK363_RS00915Not AvailablePositive192117 - 19254515670.6
ggdef domain-containing proteinTPEKDK363_RS00920Not AvailableNegative192535 - 19391450848.8
motility associated factor glycosyltransferase family proteinTPEKDK363_RS00925Not AvailableNegative193907 - 19542757684.5
6-hydroxymethylpterin diphosphokinase mpte-like proteinTPEKDK363_RS00930Not AvailableNegative195424 - 19683653634.4
hypothetical proteinTPEKDK363_RS00935Not AvailableNegative196827 - 19775334685.6
hypothetical proteinTPEKDK363_RS00940Not AvailableNegative197753 - 19970268851.9

Displaying genes 171 – 180 of 1044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Endemic syphilisCausesPMC10497860
YawsCausesPMC10497860

Displaying health effects 1 – 2 of 2 in total