Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum subsp. pertenue strain Kampung Dalan K363 is a Gram-negative, anaerobic spirochete characterized by its spiral shape and presence of flagella. This strain is classified as mesophilic, indicating that it thrives at moderate temperatures. It typically exists in a single-cell arrangement and possesses a single replicon, which is a noteworthy feature for its genetic structure. The habitat of strain K363 is associated with hosts, reflecting its biotic relationship as free-living. This connection suggests that the organism may have specific interactions with host organisms, although the details of these interactions are not elaborated. The presence of two membranes is characteristic of Gram-negative bacteria, contributing to its structural integrity and possibly influencing its pathogenicity. However, the strain is noted for its lack of mobility, which may have implications for its mode of transmission and ecological niche. In summary, Treponema pallidum subsp. pertenue strain Kampung Dalan K363 exemplifies a specialized microbial life form that thrives in host-associated environments. Its anaerobic nature, coupled with its structural features, indicates adaptations to specific ecological conditions. Understanding these traits can provide insights into the survival strategies and ecological roles of this strain within its habitat. Accessions for this strain include NZ_CP024088.1, which can be utilized for further genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
Strainsubsp. pertenue strain Kampung Dalan K363

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pertenue strain Kampung Dalan K363
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema pallidum subsp. pertenue strain Kampung Dalan K363

Gene Summary

Adenine Count

268148 bp

Thymine Count

269857 bp

Guanine Count

302737 bp

Cytosine Count

298790 bp

Genome Length

1139764 bp

Protein-coding Genes

990 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleoside-diphosphate reductase subunit alphaTPEKDK363_RS05160Not AvailableNegative1100120 - 110265795992.5
nad(p)h-dependent glycerol-3-phosphate dehydrogenaseTPEKDK363_RS05165Not AvailableNegative1102784 - 110385437881.1
nucleoside-diphosphate kinaseTPEKDK363_RS05170Not AvailableNegative1103951 - 110440016674.0
aminoacyl-trna hydrolaseTPEKDK363_RS05175Not AvailableNegative1104526 - 110513422179.1
rna polymerase sigma factor rpod/sigaTPEKDK363_RS05180Not AvailableNegative1105169 - 110605032829.8
co-chaperone groesTPEKDK363_RS05185Not AvailablePositive1106309 - 11065759471.58
hypothetical proteinTPEKDK363_RS05190Not AvailableNegative1106586 - 110852071130.9
transcription antitermination factor nusbTPEKDK363_RS05195Not AvailableNegative1108486 - 110891116015.3
peptidyl-prolyl cis-trans isomeraseTPEKDK363_RS05200Not AvailableNegative1108908 - 110999339938.2
alanine--trna ligaseTPEKDK363_RS05205Not AvailableNegative1110066 - 111188367191.2

Displaying genes 1011 – 1020 of 1044 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Endemic syphilisCausesPMC10497860
YawsCausesPMC10497860

Displaying health effects 1 – 2 of 2 in total