Pseudomonas putida strain E46

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain E46 is a gram-negative, rod-shaped bacterium that thrives in soil and wastewater environments. This organism is a heterotroph, obtaining its energy from organic compounds. It is classified as facultatively anaerobic, allowing it to survive and grow in both oxygen-rich and oxygen-poor conditions. Strain E46 is motile, possessing flagella that facilitate its movement, and it typically exists as single cells rather than in clusters. The strain has a mesophilic temperature range, indicating that it prefers moderate temperatures for growth. It possesses one replicon and has a double membrane structure, characteristic of gram-negative bacteria. Pseudomonas putida strain E46 is free-living and has a diverse range of hosts, including Homo sapiens, various plant species such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as several green algae and other organisms. While this bacterium can play beneficial roles in the environment, such as in bioremediation, it is also associated with nosocomial infections in animals. This dual nature highlights the ecological versatility of Pseudomonas putida strain E46, as it can adapt to various ecological niches while also posing potential health risks. Understanding this strain's characteristics can aid in both its application in biotechnology and its management in clinical settings.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain E46

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain E46
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain E46 chromosome, complete genome.

Gene Summary

Adenine Count

1166497 bp

Thymine Count

1165379 bp

Guanine Count

1923028 bp

Cytosine Count

1926063 bp

Genome Length

6180967 bp

Protein-coding Genes

5318 genes

Non-Coding Genes

113 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma factorCR512_RS13390Not AvailableNegative2989794 - 299031519597.9
type ii toxin-antitoxin system hipa family toxinCR512_RS13395Not AvailableNegative2990404 - 299161844282.0
transcriptional regulatorCR512_RS13400Not AvailableNegative2991618 - 299197412965.8
phenylacetic acid degradation operon negative regulatory protein paaxCR512_RS13405Not AvailableNegative2992098 - 299302135111.1
phenylacetic acid degradation protein paayCR512_RS13410Not AvailableNegative2993099 - 299369821072.5
2,3-dehydroadipyl-coa hydratase paafCR512_RS13415Not AvailablePositive2994055 - 299482827236.2
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase paagCR512_RS13420Not AvailablePositive2994864 - 299565528739.7
3-hydroxyacyl-coa dehydrogenase paahCR512_RS13425Not AvailablePositive2995658 - 299717553382.1
hydroxyphenylacetyl-coa thioesterase paaiCR512_RS13430Not AvailablePositive2997168 - 299760815673.6
3-oxoadipyl-coa thiolaseCR512_RS13435Not AvailablePositive2997601 - 299882142473.3

Displaying genes 2661 – 2670 of 5431 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total