Helicobacter pylori strain 7.13_D1b

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain 7.13_D1b is a gram-negative bacterium that exhibits a spiral shape and is classified as microaerophilic, thriving in environments with limited oxygen. This strain is characterized by its single-cell arrangement and the presence of flagella, which may aid in its motility despite being noted as non-motile. It has a mesophilic temperature range with an optimal growth temperature of 37°C. The strain is predominantly host-associated, with a diverse array of hosts including Homo sapiens, Gallus gallus, various Aves, Primates, Mammalia, Amoeba, Rodentia, Cricetinae, and Thais. This wide host range highlights its adaptability and ecological versatility. Helicobacter pylori strain 7.13_D1b is known for its pathogenicity in humans, being associated with several significant health issues. These include chronic gastric inflammation, peptic ulcer disease, and various forms of gastric cancer, such as gastric adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. The bacterium is linked to conditions like gastritis, GERD, and functional dyspepsia, indicating its role in gastrointestinal diseases. The strain has a single replicon and two membranes, typical of Gram-negative bacteria, which may contribute to its pathogenic mechanisms and interactions with host tissues. Given its significant health impacts, understanding the biology and ecology of Helicobacter pylori strain 7.13_D1b is essential for addressing its role in gastrointestinal diseases and potential therapeutic interventions.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain 7.13_D1b

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain 7.13_D1b
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain 7.13_D1b chromosome, complete genome.

Gene Summary

Adenine Count

515865 bp

Thymine Count

508757 bp

Guanine Count

328006 bp

Cytosine Count

321414 bp

Genome Length

1674080 bp

Protein-coding Genes

1537 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4149 domain-containing proteinBXP09_RS06100Not AvailableNegative1250088 - 125056117465.2
pimelyl-acp methyl ester esterase biovBXP09_RS06105Not AvailableNegative1250574 - 125109220187.6
aaa family atpaseBXP09_RS06110Not AvailableNegative1251095 - 125274762955.9
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabBXP09_RS06115Not AvailableNegative1252734 - 125399047889.9
mechanosensitive ion channel family proteinBXP09_RS06120Not AvailableNegative1253987 - 125555860276.7
3-dehydroquinate synthaseBXP09_RS06125Not AvailableNegative1255549 - 125658038968.0
cog3400 family proteinBXP09_RS06130Not AvailableNegative1256585 - 125802155879.1
trna guanosine(34) transglycosylase tgtBXP09_RS06135Not AvailablePositive1258078 - 125919341666.4
lipid a biosynthesis lauroyl acyltransferaseBXP09_RS06140Not AvailableNegative1259292 - 126027838525.5
lipopolysaccharide heptosyltransferase iBXP09_RS06145Not AvailableNegative1260275 - 126128538305.1

Displaying genes 1181 – 1190 of 1582 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total