Chitinophaga caeni strain 13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caeni strain 13 is a Gram-negative, rod-shaped bacterium. This organism is characterized by having a single replicon, which is significant in terms of its genetic organization and replication. The strain has been cataloged with the accession number NZ_CP023777.1, allowing for its identification in genomic databases. Chitinophaga caeni, as a member of the Chitinophagaceae family, is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This trait suggests that Chitinophaga caeni strain 13 may play a role in nutrient cycling within its ecosystem, particularly in environments rich in organic matter derived from decaying organisms. The ability to degrade chitin can contribute to soil health and fertility, as it helps break down complex organic materials, making nutrients available for other organisms in the ecosystem. Overall, Chitinophaga caeni strain 13 exemplifies the ecological importance of microorganisms in the decomposition and nutrient cycling processes, highlighting their role in maintaining ecosystem balance and promoting soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caeni
Strainstrain 13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caeni strain 13 chromosome, complete genome.

Gene Summary

Adenine Count

1518061 bp

Thymine Count

1515796 bp

Guanine Count

1118484 bp

Cytosine Count

1127580 bp

Genome Length

5279921 bp

Protein-coding Genes

4290 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinCOR50_RS19020Not AvailablePositive4528665 - 4531982124383.0
ragb/susd family nutrient uptake outer membrane proteinCOR50_RS19025Not AvailablePositive4531994 - 453343654869.2
duf4843 domain-containing proteinCOR50_RS19030Not AvailablePositive4533454 - 453421528767.4
pkd-like family lipoproteinCOR50_RS19035Not AvailablePositive4534242 - 453573255894.1
tlpa disulfide reductase family proteinCOR50_RS19040Not AvailablePositive4535761 - 453680439049.4
m16 family metallopeptidaseCOR50_RS19045Not AvailablePositive4537149 - 4540001106305.0
gh92 family glycosyl hydrolaseCOR50_RS19050Not AvailableNegative4540318 - 454259785220.9
duf4838 domain-containing proteinCOR50_RS19055Not AvailableNegative4542933 - 454512282743.0
yaio family outer membrane beta-barrel proteinCOR50_RS19060Not AvailableNegative4545176 - 454706872664.2
glycosyltransferase family 2 proteinCOR50_RS19065Not AvailableNegative4547077 - 454852555701.4

Displaying genes 3741 – 3750 of 4366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.