Chitinophaga caeni strain 13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caeni strain 13 is a Gram-negative, rod-shaped bacterium. This organism is characterized by having a single replicon, which is significant in terms of its genetic organization and replication. The strain has been cataloged with the accession number NZ_CP023777.1, allowing for its identification in genomic databases. Chitinophaga caeni, as a member of the Chitinophagaceae family, is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This trait suggests that Chitinophaga caeni strain 13 may play a role in nutrient cycling within its ecosystem, particularly in environments rich in organic matter derived from decaying organisms. The ability to degrade chitin can contribute to soil health and fertility, as it helps break down complex organic materials, making nutrients available for other organisms in the ecosystem. Overall, Chitinophaga caeni strain 13 exemplifies the ecological importance of microorganisms in the decomposition and nutrient cycling processes, highlighting their role in maintaining ecosystem balance and promoting soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caeni
Strainstrain 13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caeni strain 13 chromosome, complete genome.

Gene Summary

Adenine Count

1518061 bp

Thymine Count

1515796 bp

Guanine Count

1118484 bp

Cytosine Count

1127580 bp

Genome Length

5279921 bp

Protein-coding Genes

4290 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseCOR50_RS12540Not AvailablePositive2968320 - 296948342317.5
rip metalloprotease rsepCOR50_RS12545Not AvailablePositive2969525 - 297087149910.3
Tmrna,resume consensus sequence (at 91): tttaaatggcgaaaataaNot AvailableNot AvailablePositive2970961 - 2971333Not Available
hypothetical proteinCOR50_RS22610Not AvailableNegative2971718 - 29718705698.97
rhs repeat-associated core domain-containing proteinCOR50_RS22760Not AvailablePositive2971841 - 297214611607.1
srpbcc family proteinCOR50_RS12560Not AvailablePositive2972183 - 297316337343.3
is256 family transposaseCOR50_RS12565Not AvailableNegative2973237 - 297443345963.3
wg repeat-containing proteinCOR50_RS12570Not AvailableNegative2974568 - 297695589829.4
hypothetical proteinCOR50_RS12575Not AvailableNegative2976958 - 297831051969.4
t9ss type a sorting domain-containing proteinCOR50_RS12580Not AvailablePositive2979100 - 298142486835.7

Displaying genes 2471 – 2480 of 4366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.