Chitinophaga caeni strain 13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caeni strain 13 is a Gram-negative, rod-shaped bacterium. This organism is characterized by having a single replicon, which is significant in terms of its genetic organization and replication. The strain has been cataloged with the accession number NZ_CP023777.1, allowing for its identification in genomic databases. Chitinophaga caeni, as a member of the Chitinophagaceae family, is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This trait suggests that Chitinophaga caeni strain 13 may play a role in nutrient cycling within its ecosystem, particularly in environments rich in organic matter derived from decaying organisms. The ability to degrade chitin can contribute to soil health and fertility, as it helps break down complex organic materials, making nutrients available for other organisms in the ecosystem. Overall, Chitinophaga caeni strain 13 exemplifies the ecological importance of microorganisms in the decomposition and nutrient cycling processes, highlighting their role in maintaining ecosystem balance and promoting soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caeni
Strainstrain 13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caeni strain 13 chromosome, complete genome.

Gene Summary

Adenine Count

1518061 bp

Thymine Count

1515796 bp

Guanine Count

1118484 bp

Cytosine Count

1127580 bp

Genome Length

5279921 bp

Protein-coding Genes

4290 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseCOR50_RS08900Not AvailableNegative2123435 - 212481150856.2
phospho-n-acetylmuramoyl-pentapeptide- transferaseCOR50_RS08905Not AvailableNegative2124833 - 212608346574.4
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseCOR50_RS08910Not AvailableNegative2126107 - 212757353730.6
penicillin-binding proteinCOR50_RS08915Not AvailableNegative2127573 - 212967578563.9
ftsl-like putative cell division proteinCOR50_RS08920Not AvailableNegative2129823 - 213017913780.0
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhCOR50_RS08925Not AvailableNegative2130287 - 213119534253.2
division/cell wall cluster transcriptional repressor mrazCOR50_RS08930Not AvailableNegative2131209 - 213167617577.2
outer membrane protein assembly factor bamdCOR50_RS08935Not AvailablePositive2132089 - 213292232679.8
dna-directed rna polymerase subunit omegaCOR50_RS08940Not AvailablePositive2132891 - 213323213261.5
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcCOR50_RS08945Not AvailablePositive2133302 - 213451943293.1

Displaying genes 1751 – 1760 of 4366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.