Chitinophaga caeni strain 13

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caeni strain 13 is a Gram-negative, rod-shaped bacterium. This organism is characterized by having a single replicon, which is significant in terms of its genetic organization and replication. The strain has been cataloged with the accession number NZ_CP023777.1, allowing for its identification in genomic databases. Chitinophaga caeni, as a member of the Chitinophagaceae family, is likely involved in the degradation of chitin, a polysaccharide found in the exoskeletons of arthropods and the cell walls of fungi. This trait suggests that Chitinophaga caeni strain 13 may play a role in nutrient cycling within its ecosystem, particularly in environments rich in organic matter derived from decaying organisms. The ability to degrade chitin can contribute to soil health and fertility, as it helps break down complex organic materials, making nutrients available for other organisms in the ecosystem. Overall, Chitinophaga caeni strain 13 exemplifies the ecological importance of microorganisms in the decomposition and nutrient cycling processes, highlighting their role in maintaining ecosystem balance and promoting soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caeni
Strainstrain 13

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caeni strain 13 chromosome, complete genome.

Gene Summary

Adenine Count

1518061 bp

Thymine Count

1515796 bp

Guanine Count

1118484 bp

Cytosine Count

1127580 bp

Genome Length

5279921 bp

Protein-coding Genes

4290 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l19COR50_RS08205Not AvailablePositive1944342 - 194468913070.9
twin-arginine translocase tata/tate family subunitCOR50_RS08210Not AvailablePositive1944928 - 19451588509.74
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataCOR50_RS08215Not AvailablePositive1945261 - 194670952753.8
lytic transglycosylase domain-containing proteinCOR50_RS08220Not AvailablePositive1946723 - 194795546228.6
rna-binding s4 domain-containing proteinCOR50_RS08225Not AvailablePositive1948057 - 194845815578.6
diaminopimelate decarboxylaseCOR50_RS08230Not AvailablePositive1948530 - 194975946151.8
gaf domain-containing proteinCOR50_RS08235Not AvailablePositive1950013 - 195235290432.2
bama/tama family outer membrane proteinCOR50_RS08240Not AvailableNegative1952884 - 1956555139646.0
sdia-regulated domain-containing proteinCOR50_RS08245Not AvailableNegative1956565 - 195727527207.1
pycsar system effector family proteinCOR50_RS08250Not AvailablePositive1957494 - 195875047643.8

Displaying genes 1611 – 1620 of 4366 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.