Brachybacterium ginsengisoli strain DCY80

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermabacteraceae

Genus

Brachybacterium

Description

Brachybacterium ginsengisoli strain DCY80 is characterized by having a single replicon and is cataloged under the accession number NZ_CP023564.1. This bacterium belongs to the genus Brachybacterium, which is known for its role in various ecological niches, particularly in soil and plant-associated environments. The strain DCY80 is particularly noteworthy for its association with ginseng, a plant of significant economic and medicinal value. The interactions between Brachybacterium ginsengisoli and ginseng could imply potential benefits in terms of plant health, nutrient cycling, or disease resistance. Such relationships highlight the importance of soil microbiota in supporting plant growth and resilience, particularly in agricultural contexts. While detailed metabolic pathways, ecological roles, and physiological traits of strain DCY80 are not included here, the presence of a single replicon suggests a streamlined genomic organization, which may influence its adaptability and functionality in its habitat. Understanding the genomic and ecological attributes of Brachybacterium ginsengisoli strain DCY80 can contribute to insights into its potential applications in ginseng cultivation and broader agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermabacteraceae
GenusBrachybacterium
SpeciesBrachybacterium ginsengisoli
Strainstrain DCY80

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brachybacterium ginsengisoli strain DCY80 chromosome, complete

Gene Summary

Adenine Count

561089 bp

Thymine Count

562920 bp

Guanine Count

1412612 bp

Cytosine Count

1416632 bp

Genome Length

3953253 bp

Protein-coding Genes

3462 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mannitol dehydrogenase family proteinCFK41_RS16535Not AvailablePositive3703700 - 370522053634.5
l-idonate 5-dehydrogenaseCFK41_RS16540Not AvailablePositive3705217 - 370622135217.8
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseCFK41_RS16545Not AvailablePositive3706296 - 370694921834.2
sugar kinaseCFK41_RS16550Not AvailablePositive3706946 - 370791133082.4
marr family winged helix-turn-helix transcriptional regulatorCFK41_RS16555Not AvailablePositive3708106 - 370854315552.5
mfs transporterCFK41_RS16560Not AvailablePositive3708645 - 370995244117.9
gamma-glutamyltransferase family proteinCFK41_RS16565Not AvailableNegative3709963 - 371171161196.3
d-mannonate dehydratase mandCFK41_RS16570Not AvailableNegative3711991 - 371322945150.4
mfs transporterCFK41_RS16575Not AvailableNegative3713329 - 371474149677.4
iclr family transcriptional regulatorCFK41_RS16580Not AvailablePositive3714967 - 371575827667.0

Displaying genes 3301 – 3310 of 3524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.