Brachybacterium ginsengisoli strain DCY80

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermabacteraceae

Genus

Brachybacterium

Description

Brachybacterium ginsengisoli strain DCY80 is characterized by having a single replicon and is cataloged under the accession number NZ_CP023564.1. This bacterium belongs to the genus Brachybacterium, which is known for its role in various ecological niches, particularly in soil and plant-associated environments. The strain DCY80 is particularly noteworthy for its association with ginseng, a plant of significant economic and medicinal value. The interactions between Brachybacterium ginsengisoli and ginseng could imply potential benefits in terms of plant health, nutrient cycling, or disease resistance. Such relationships highlight the importance of soil microbiota in supporting plant growth and resilience, particularly in agricultural contexts. While detailed metabolic pathways, ecological roles, and physiological traits of strain DCY80 are not included here, the presence of a single replicon suggests a streamlined genomic organization, which may influence its adaptability and functionality in its habitat. Understanding the genomic and ecological attributes of Brachybacterium ginsengisoli strain DCY80 can contribute to insights into its potential applications in ginseng cultivation and broader agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermabacteraceae
GenusBrachybacterium
SpeciesBrachybacterium ginsengisoli
Strainstrain DCY80

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brachybacterium ginsengisoli strain DCY80 chromosome, complete

Gene Summary

Adenine Count

561089 bp

Thymine Count

562920 bp

Guanine Count

1412612 bp

Cytosine Count

1416632 bp

Genome Length

3953253 bp

Protein-coding Genes

3462 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCFK41_RS06170Not AvailablePositive1398841 - 139985136796.8
pseudaminic acid synthaseCFK41_RS06175Not AvailablePositive1399909 - 140098238058.9
bifunctional udp-2,4-diacetamido-2,4,6-trideoxy-beta-l-altropyranose hydrolase/gnat family n-acetyltransferaseCFK41_RS06180Not AvailableNegative1400963 - 140245952184.2
cytidylyltransferase domain-containing proteinCFK41_RS06185Not AvailableNegative1402456 - 140319626344.4
udp-n-acetylglucosamine 4,6-dehydratase (inverting)CFK41_RS06190Not AvailablePositive1403268 - 140425736673.9
udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine transaminaseCFK41_RS06195Not AvailablePositive1404259 - 140538639923.9
duf6541 family proteinCFK41_RS06200Not AvailableNegative1405436 - 140742468449.9
duf2304 domain-containing proteinCFK41_RS06205Not AvailableNegative1407421 - 140780113952.7
glycosyltransferase family 2 proteinCFK41_RS06210Not AvailablePositive1407909 - 140861625787.6
lcp family proteinCFK41_RS06215Not AvailableNegative1408663 - 140988342780.5

Displaying genes 1231 – 1240 of 3524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.