Brachybacterium ginsengisoli strain DCY80

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Dermabacteraceae

Genus

Brachybacterium

Description

Brachybacterium ginsengisoli strain DCY80 is characterized by having a single replicon and is cataloged under the accession number NZ_CP023564.1. This bacterium belongs to the genus Brachybacterium, which is known for its role in various ecological niches, particularly in soil and plant-associated environments. The strain DCY80 is particularly noteworthy for its association with ginseng, a plant of significant economic and medicinal value. The interactions between Brachybacterium ginsengisoli and ginseng could imply potential benefits in terms of plant health, nutrient cycling, or disease resistance. Such relationships highlight the importance of soil microbiota in supporting plant growth and resilience, particularly in agricultural contexts. While detailed metabolic pathways, ecological roles, and physiological traits of strain DCY80 are not included here, the presence of a single replicon suggests a streamlined genomic organization, which may influence its adaptability and functionality in its habitat. Understanding the genomic and ecological attributes of Brachybacterium ginsengisoli strain DCY80 can contribute to insights into its potential applications in ginseng cultivation and broader agricultural practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyDermabacteraceae
GenusBrachybacterium
SpeciesBrachybacterium ginsengisoli
Strainstrain DCY80

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Brachybacterium ginsengisoli strain DCY80 chromosome, complete

Gene Summary

Adenine Count

561089 bp

Thymine Count

562920 bp

Guanine Count

1412612 bp

Cytosine Count

1416632 bp

Genome Length

3953253 bp

Protein-coding Genes

3462 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase/phosphoribosylanthranilate isomerase priaCFK41_RS05665Not AvailablePositive1275284 - 127601825300.9
sseb family proteinCFK41_RS05670Not AvailablePositive1276015 - 127683628374.6
duf1844 domain-containing proteinCFK41_RS05675Not AvailableNegative1276899 - 127727913326.4
hypothetical proteinCFK41_RS05680Not AvailableNegative1277398 - 127838132617.4
translation initiation factor if-3CFK41_RS05685Not AvailablePositive1278758 - 127933621409.4
50s ribosomal protein l35CFK41_RS05690Not AvailablePositive1279362 - 12795567311.1
50s ribosomal protein l20CFK41_RS05695Not AvailablePositive1279616 - 127999614289.3
trmh family rna methyltransferaseCFK41_RS05700Not AvailablePositive1280016 - 128091831259.2
cytochrome c oxidase assembly proteinCFK41_RS05705Not AvailablePositive1280915 - 128297271898.7
heparan-alpha-glucosaminide n-acetyltransferase domain-containing proteinCFK41_RS05710Not AvailableNegative1283337 - 128475850019.0

Displaying genes 1131 – 1140 of 3524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.